SNP Profiles matching IMC 47

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	1	2	3	4	5	6	7	8	9	10	11	12	13	14
_Input profile	TT	CC	CC	TT	CT	GG	AC	CG	AG	CT	GG	GG	AT	CC
1._RUQ_1055	TT	CC	CC	TT	CT	GG	AC	CG	AG	CT	GG	GG	AT	CC
2._IMC_47	_	_	CC	TT	CT	_	AC	CC	AG	CT	_	_	AT	_
3._NA_26	_	_	CC	TT	CT	_	AC	GG	AG	CT	_	_	AT	_
4._RUQ_849	_	_	CC	GT	CT	_	AC	CG	AG	CT	_	_	AT	_
5._RUQ_1590	TT	CC	CC	TT	CT	GG	AC	GG	AG	CT	GG	GG	AA	CC

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	AA	AC	CC	GG	CG	AC	CC	CC	TT	GG	AG	TT	AC	CC
1._RUQ_1055	AA	AC	CC	GG	CG	AC	CC	CC	TT	GG	AG	TT	AC	CC
2._IMC_47	AA	AC	CC	GG	GG	AC	_	CC	_	GG	_	_	_	CC
3._NA_26	AA	AC	CC	GG	GG	AC	_	CC	_	GG	_	_	_	CC
4._RUQ_849	AA	AC	CC	GG	GG	AC	_	CC	_	GG	_	_	_	CC
5._RUQ_1590	AA	AC	CC	GT	CG	AC	CT	CC	TT	GG	GG	TT	AC	CC

	29	30	31	32	33	34	35	36	37	38	39	40	41	42
_Input profile	CC	TT	AA	CC	CC	GG	GG	TT	GT	CT	CC	TT	CG	AG
1._RUQ_1055	CC	TT	AA	CC	CC	GG	GG	TT	GT	CT	CC	TT	CG	AG
2._IMC_47	_	TT	AA	_	CC	_	_	_	GT	_	_	TT	CG	AG
3._NA_26	_	TT	AA	_	CC	_	_	_	GT	_	_	TT	CG	AG
4._RUQ_849	_	CT	AG	_	CC	_	_	_	GT	_	_	TT	CG	AG
5._RUQ_1590	CC	TT	AA	CC	CC	GG	GG	TT	GT	TT	CC	TT	GG	AG

Input profile: IMC_47 RUQ_849

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

1._IMC_57 RUQ_1055

identical
42 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

2._IMC_47

95.8 %
24 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: 6B F401 T6

Dapeng Zhang, 2016

3._NA_26

95.8 %
24 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: 5B E352 T5

Dapeng Zhang, 2016

4._IMC_47 RUQ_849

91.7 %
24 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2016

5._IMC_50 RUQ_1590

91.7 %
42 shared markers

View View all Clone Any

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

Key to SNP Markers

1	TcSNP75	2	TcSNP90	3	TcSNP144	4	TcSNP150	5	TcSNP151
6	TcSNP174	7	TcSNP193	8	TcSNP226	9	TcSNP230	10	TcSNP242
11	TcSNP329	12	TcSNP364	13	TcSNP372	14	TcSNP448	15	TcSNP469
16	TcSNP529	17	TcSNP534	18	TcSNP560	19	TcSNP577	20	TcSNP591
21	TcSNP602	22	TcSNP619	23	TcSNP702	24	TcSNP723	25	TcSNP731
26	TcSNP799	27	TcSNP823	28	TcSNP872	29	TcSNP878	30	TcSNP891
31	TcSNP998	32	TcSNP999	33	TcSNP1060	34	TcSNP1063	35	TcSNP1111
36	TcSNP1126	37	TcSNP1253	38	TcSNP1309	39	TcSNP1439	40	TcSNP1442
41	TcSNP1458	42	TcSNP1484

SNP Profiles matching IMC 47

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Input profile: IMC_47 RUQ_849

1._IMC_57 RUQ_1055

identical 42 shared markers

2._IMC_47

95.8 % 24 shared markers

3._NA_26

95.8 % 24 shared markers

4._IMC_47 RUQ_849

91.7 % 24 shared markers

5._IMC_50 RUQ_1590

91.7 % 42 shared markers

identical
42 shared markers

95.8 %
24 shared markers

95.8 %
24 shared markers

91.7 %
24 shared markers

91.7 %
42 shared markers